No articles match
Alpha diversity and geographic range size of Carboniferous and Permian tetrapods4 hours ago
Introduction | Installation | Now that that's out of the way, let's begin! | The Tetrapods Dataset | Exploring the functions | Unique taxa and alpha diversity | Exploring range size/spatial issues through time | References
Latitudinal trends in Phanerozoic reefs4 hours ago
Introduction | Installation | Using the package | Let's begin! | References
Adding geological timescales to plots3 days ago
Adding geological timescales | Scales on other axes | Add multiple timescales | Stack multiple scales | Timescales and faceted plots | Resize labels to fit inside interval rectangles | Scales on discrete axes | Custom discrete scales | More advanced topics
Plotting temporal data3 days ago
Plot occurrences through time | Geological timescale color scales for ggplot | Facetting with the geological timescale
Building an app with shinypal6 days ago
The host app | Anatomy of a module | ui-main.R | ui-aux.R | server.R | Plot steps | The report template | Deploying to the browser with shinylive
Contributing to palaeoverse: structure and standards1 months ago
Introduction | Files | R style guide | Data | Raw data | Internal data | Exported data | External data | Data documentation | What does it mean to document your data? | Functions | Conventions | Documentation | Efficiency | Error messages | Warning messages | Tests | Contributing to palaeoverse | Git and GitHub | How to contribute | Minor changes | Substantial changes | Pull request process | Code review
Advanced examples in base R2 months ago
Introduction | Basic accession and transformation | Geographic distribution | Phylogenetics | Network plots
Advanced examples in ggplot2 months ago
Introduction | Basic accession and transformation | Geographic distribution | Phylogenetics | Network plots
Advanced examples in base R2 months ago
Introduction | Basic accession and transformation | Geographic distribution | Phylogenetics | Network plots
Advanced examples in ggplot2 months ago
Introduction | Basic accession and transformation | Geographic distribution | Phylogenetics | Network plots
Adding geological timescales to phylogenies7 months ago
Timescales and phylogenies | Phylogenies with only fossil taxa | Circular phylogenies | Circular phylogenies with "stacked" timescales | Disclaimer | Axis timescales on radial phylogenies | Tip labels on radial phylogenies | Clade labels on radial phylogenies
Transforming coordinate systems8 months ago
coord_trans meets coord_flip | 2D linear transformations
Introduction to rredlist10 months ago
What rredlist is not: | Installation | Authentication | Overview of available features | Example usage | Loading the package | Search for assessments for a particular species | Search for assessments that recommend particular conservation actions | Get a list of all conservation actions | Return assessments with a particular conservation action | Advanced usage | High level vs. low level interfaces | High level interface | Low level interface | Usage best practice | Citing the IUCN Red List API | Rate Limiting | API Versioning
rredlist benchmarks10 months ago
Introduction | Head-to-head benchmarks | 1. Get species count | 2. Lookup individual assessment | 3. Taxonomic lookup with defaults | 4. Taxonomic lookup with query (one page of results) | 5. Taxonomic lookup with query (~10 pages of results) | 6. Taxonomic lookup with query (~40 pages of results) | 7. Taxonomic lookup with query (~900 pages of results) | And the winner is... | Query breakdown | Conclusion
Using rredlist within a research workflow10 months ago
Introduction | How have mollusc assessments increased through time? | What is the conservation status of Australian reptiles? | What habitats do conifers and cycads occur in? | Some recent published uses of rredlist
Introduction to rredlist10 months ago
What rredlist is not: | Installation | Authentication | Overview of available features | Example usage | Loading the package | Search for assessments for a particular species | Search for assessments that recommend particular conservation actions | Get a list of all conservation actions | Return assessments with a particular conservation action | Advanced usage | High level vs. low level interfaces | High level interface | Low level interface | Usage best practice | Citing the IUCN Red List API | Rate Limiting | API Versioning
rredlist benchmarks10 months ago
Introduction | Head-to-head benchmarks | 1. Get species count | 2. Lookup individual assessment | 3. Taxonomic lookup with defaults | 4. Taxonomic lookup with query (one page of results) | 5. Taxonomic lookup with query (~10 pages of results) | 6. Taxonomic lookup with query (~40 pages of results) | 7. Taxonomic lookup with query (~900 pages of results) | And the winner is... | Query breakdown | Conclusion
Using rredlist within a research workflow10 months ago
Introduction | How have mollusc assessments increased through time? | What is the conservation status of Australian reptiles? | What habitats do conifers and cycads occur in? | Some recent published uses of rredlist
Plotting geological/stratigraphical patterns10 months ago
Stratigraphic columns | Plot stratigraphic column | Use stratigraphic patterns | Further customization
Making a geologic outcrop map with rmacrostrat1 years ago
Introduction | Installation | Context | Fetching | Visualization | References
Plotting a stratigraphic column with rmacrostrat1 years ago
Introduction | Installation | Context | Retrieving data | Exploring data | Plotting the stratigraphic column | References
Quantifying the geological completeness of paleontological sampling in North America1 years ago
Introduction | Installation | Context | Retrieving data | Summarizing data | Visualizing data | Bonus plot: rock classes | References
Getting started with rphylopic2 years ago
Introduction | Installation | How does it work? | Get an image uuid | Pick an image | Plot an image | Base R | ggplot2 | Transforming silhouettes | Get attribution | Save an image | More advanced examples
Getting started with rphylopic2 years ago
Introduction | Installation | How does it work? | Get an image uuid | Pick an image | Plot an image | Base R | ggplot2 | Transforming silhouettes | Get attribution | Save an image | More advanced examples
Combining and arranging plots2 years ago
Arranging plots with deeptime | Combining plots | Other resources for arranging plots
Plotting trait data2 years ago
Plot disparity through time | Disparity in base R | Phylomorphospaces