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rredlist - 'IUCN' Red List Client

'IUCN' Red List (<https://api.iucnredlist.org/>) client. The 'IUCN' Red List is a global list of threatened and endangered species. Functions cover all of the Red List 'API' routes. An 'API' key is required.

Last updated

iucnbiodiversityapiweb-servicestraitshabitatspeciesconservationapi-wrapperiucn-red-listtaxize

11.57 score 63 stars 13 dependents 275 scripts 7.3k downloads

rredlist - 'IUCN' Red List Client

'IUCN' Red List (<https://api.iucnredlist.org/>) client. The 'IUCN' Red List is a global list of threatened and endangered species. Functions cover all of the Red List 'API' routes. An 'API' key is required.

Last updated

iucnbiodiversityapiweb-servicestraitshabitatspeciesconservationapi-wrapperiucn-red-listtaxize

11.57 score 63 stars 13 dependents 275 scripts 7.3k downloads

deeptime - Plotting Tools for Anyone Working in Deep Time

Extends the functionality of other plotting packages (notably 'ggplot2') to help facilitate the plotting of data over long time intervals, including, but not limited to, geological, evolutionary, and ecological data. The primary goal of 'deeptime' is to enable users to add highly customizable timescales to their visualizations. Other functions are also included to assist with other areas of deep time visualization.

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geologyggplot2paleontologyvisualization

10.57 score 107 stars 3 dependents 404 scripts 836 downloads

rphylopic - Get Silhouettes of Organisms from PhyloPic

Work with the PhyloPic Web Service (<http://api-docs.phylopic.org/v2/>) to fetch silhouette images of organisms. Includes functions for adding silhouettes to both base R plots and ggplot2 plots.

Last updated

base-rggplot2phylopicsilhouette

9.67 score 97 stars 362 scripts 707 downloads

rphylopic - Get Silhouettes of Organisms from PhyloPic

Work with the PhyloPic Web Service (<http://api-docs.phylopic.org/v2/>) to fetch silhouette images of organisms. Includes functions for adding silhouettes to both base R plots and ggplot2 plots.

Last updated

base-rggplot2phylopicsilhouette

9.67 score 97 stars 362 scripts 707 downloads

palaeoverse - Prepare and Explore Data for Palaeobiological Analyses

Provides functionality to support data preparation and exploration for palaeobiological analyses, improving code reproducibility and accessibility. The wider aim of 'palaeoverse' is to bring the palaeobiological community together to establish agreed standards. The package currently includes functionality for data cleaning, binning (time and space), exploration, summarisation and visualisation. Reference datasets (i.e. Geological Time Scales <https://stratigraphy.org/chart/>) and auxiliary functions are also provided. Details can be found in: Jones et al., (2023) <doi:10.1111/2041-210X.14099>.

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biodiversityfossilpalaeobiologypaleobiology

9.41 score 29 stars 1 dependents 138 scripts 503 downloads

rmacrostrat - Fetch Geologic Data from the 'Macrostrat' Platform

Work with the 'Macrostrat' (<https://macrostrat.org/>) Web Service (v.2, <https://macrostrat.org/api/v2>) to fetch geological data relevant to the spatial and temporal distribution of sedimentary, igneous, and metamorphic rocks as well as data extracted from them.

Last updated

5.86 score 2 stars 30 scripts 348 downloads

shinymeta - Export Domain Logic from Shiny using Meta-Programming

Provides tools for capturing logic in a Shiny app and exposing it as code that can be run outside of Shiny (e.g., from an R console). It also provides tools for bundling both the code and results to the end user.

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5.68 score 10 dependents 100 scripts 541 downloads

deeptimedata - Geologic Pattern Data from FGDC/USGS Used in 'deeptime'

Geologic pattern data from the Federal Geographic Data Committee (FGDC) and United States Geological Survey (USGS) as put forward in the Digital Cartographic Standard for Geologic Map Symbolization (<https://ngmdb.usgs.gov/fgdc_gds/geolsymstd.php>). Access functions are provided in the accompanying package 'deeptime'.

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3.78 score 4 dependents 957 downloads

shinypal - Tools to Make Modular and Interactive R Workflow Builders

Provides the building blocks for modular, interactive shiny applications that turn point-and-click pipelines into reproducible R and R Markdown code. Using shinymeta, shinypal assembles code modules into a draggable workflow, shows the equivalent code as the user builds it, and lets them export the whole pipeline as a runnable script or rendered report.

Last updated

3.48 score 2 scripts

pcmtools - Tools for Phylogenetic Comparative Methods

Various tools to help with performing phylogenetic comparative methods and curating/visualizing the results.

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comparativemethodsphylogenetic

2.18 score 3 stars 2 scripts