Package: pcmtools 0.0.4.0
pcmtools: Tools for Phylogenetic Comparative Methods
Various tools to help with performing phylogenetic comparative methods and curating/visualizing the results.
Authors:
pcmtools_0.0.4.0.tar.gz
pcmtools_0.0.4.0.zip(r-4.7)pcmtools_0.0.4.0.zip(r-4.6)pcmtools_0.0.4.0.zip(r-4.5)
pcmtools_0.0.4.0.tgz(r-4.6-any)pcmtools_0.0.4.0.tgz(r-4.5-any)
pcmtools_0.0.4.0.tar.gz(r-4.7-any)pcmtools_0.0.4.0.tar.gz(r-4.6-any)
pcmtools_0.0.4.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
pcmtools/json (API)
| # Install 'pcmtools' in R: |
| install.packages('pcmtools', repos = c('https://willgearty.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/willgearty/pcmtools/issues
comparativemethodsphylogenetic
Last updated from:14fb49ce08. Checks:7 ERROR, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | ERROR | 148 | ||
| source / vignettes | OK | 231 | ||
| linux-release-x86_64 | ERROR | 155 | ||
| macos-release-arm64 | ERROR | 94 | ||
| macos-oldrel-arm64 | ERROR | 87 | ||
| windows-devel | ERROR | 108 | ||
| windows-release | ERROR | 103 | ||
| windows-oldrel | ERROR | 99 | ||
| wasm-release | OK | 117 |
Exports:AICweightsdeltaAICextractSimmapDensitymergeMappedStates2OUwieAICSummOUwieCleanParOUwieModelAvgOUwieParSummtraitStatsThroughTime
Dependencies:apecliclusterGenerationcodacodetoolscombinatcpp11DEoptimdigestdoParallelexpmfastmatchforeachgenericsglueigraphiteratorslatticelifecyclemagrittrmapsMASSMatrixmnormtnlmenumDerivoptimParallelphangornphytoolspkgconfigquadprogRcpprlangscatterplot3dvctrszoo
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Calculate AIC weights | AICweights |
| Calculate deltaAIC | deltaAIC |
| Extract posterior values from densityMap and/or contMap objects | extractSimmapDensity |
| Rename, merge, or split mapped states | mergeMappedStates2 |
| Summarize the model fit across (many) OUwie results using AICc | OUwieAICSumm |
| Clean extracted parameters from OUwie results | OUwieCleanPar |
| Model average the parameters across (many) OUwie results using AICc | OUwieModelAvg |
| Extract parameters from OUwie results | OUwieParSumm |
| Calculate phenotypic statistics through time | traitStatsThroughTime |
